ORCID iD iconorcid.org/0000-0003-3165-3218

Research articles

[10] Clémentine Decamps, Alexis Arnaud, Florent Petitprez, Mira Ayadi, Aurélia Baurès, Lucile Armenoult, HADACA consortium, Rémy Nicolle, Richard Tomasini, Aurélien de Reyniès, Jérôme Cros, Yuna Blum, Magali Richard. (2020) DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification. BioRxiv Click

[9] Richard, M., Decamps, C., Chuffart, F., Brambilla, E., Rousseaux, S., Khochbin, S., Jost, D. (2020) PenDA, a rank-based method for Personalized Differential Analysis: application to lung cancer. PLoS Comput Biol 16, e1007869 Click Download reference datasets

[8] Clementine Decamps, Florian Privé, Raphael Bacher, Daniel Jost, Arthur Waguet, HADACA consortium, Eugene Andres Houseman, Eugene Lurie, Pavlo Lutsik, Aleksandar Milosavljevic, Michael Scherer, Michael G.B. Blum, Magali Richard (2020). Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software. BMC Bioinformatics 21, 1–15 Click

[7] D’Alessandro M, Richard M, Stigloher C, Gache V, Boulin T, Richmond JE, Bessereau JL. (2018) CRELD1 is an evolutionarily-conserved maturational enhancer of ionotropic acetylcholine receptors. Elife. 2018 Nov 7;7. pii: e39649. Click

[6] Salignon #, J., Richard #, M., Fulcrand, E., Duplus-Bottin, H. & Yvert, G. (2018) Genomics of cellular proliferation in periodic environmental fluctuations. Mol Syst Biol. 2018 Mar 5;14(3):e7823. Click

[5] Richard, M.*, Chuffart, F, Duplus-Bottin, H., Pouyet, F., Spichty, M., Fulcrand, E., Entrevan, M., Barthelaix, A., Springer, M., Jost, D., and G. Yvert , G. (2018). Assigning function to natural allelic variation via dynamic modeling of gene network induction. Molecular Systems Biology, 14, e7803. Click or PDF

[4] Chuffart, F., Richard, M., Jost, D., Burny, C., Duplus-Bottin, H., Ohya, Y., & Yvert, G. (2016). Exploiting Single-Cell Quantitative Data to Map Genetic Variants Having Probabilistic Effects. PLoS Genetics, 12(8), e1006213. Click or PDF

[3] Richard, M. & Yvert, G. L. How does evolution tune biological noise? Front. Genet. 5, 1011 (2014). Click or PDF

[2] Richard, M., Boulin, T., Robert, V. J. P., Richmond, J. E., & Bessereau, J.-L. (2013). Biosynthesis of ionotropic acetylcholine receptors requires the evolutionarily conserved ER membrane complex. Proceedings of the National Academy of Sciences of the United States of America, 110(11), E1055???63. Click or PDF

[1] Legent, K., Steinhauer, J., Richard, M., & Treisman, J. E. (2012). A screen for X-linked mutations affecting Drosophila photoreceptor differentiation identifies Casein kinase 1?? as an essential negative regulator of wingless signaling. Genetics, 190(2), 601???616. Click or PDF

(#): joint first authors

R packages

medepir MEthylation DEconvoluation PIpeline in R

penda R package to calculate personalized differential analysis of omics data.