CV
Major Research Interests
- Computational biology of cancer
- Bioinformatics, Computational methods
- Tumor heterogeneity, Deconvolution, Cell plasticity
- Biostatistics, Multimodal data integration, Causal analysis
Research Activities
- 2025 – Present – CNRS Researcher (CRCN), LIG, Univ-Grenoble-Alpes, Grenoble, France
- 2018 – 2025 – CNRS Researcher (CRCN), TIMC, Univ-Grenoble-Alpes, Grenoble, France
- 2017 – Postdoc, TIMC, Univ-Grenoble-Alpes, Grenoble, France
Postdoc in the group of Daniel Jost (Computational Biology and Mathematics) - 2013 – 2016 – Postdoc, LBMC, ENS Lyon, Lyon, France
Group of Gael Yvert (Inter-species genetic variations in yeast) - 2008 – 2012 – Ph.D. Student, IBENS, ENS Ulm, Paris, France
Group of Jean-Louis Bessereau (Biosynthesis of cholinergic receptors in nematodes)
Education
- 2022 – HDR, Univ. Grenoble Alpes, France - Thesis: Investigation of tumor heterogeneity based on computational approaches
- 2015 – D.U., Statistical methods, Univ. Strasbourg, France
- 2012 – Ph.D. Cellular Biology, Univ. Paris VI, France - Analysis of the cholinergic neuromuscular junction by a genetic approach in C. elegans
- 2008 – M.Sc. Genetics, Univ. Paris VII, France
Career Breaks
- 2023: 10 months maternity leave (3rd child)
- 2020: 6 months maternity leave (2nd child)
- 2017: 5 months maternity leave (1st child)
Professional Services
Expertise, Editorial & Scientific Activities
- Reviews: Nucleic Acid Research, Bioinformatics, Epigenetics, BMC Bioinformatics
- Board Membership: ChaLearn, CodaBench, BioSyL
- Thesis Jury Member: A. Stigiani (2019), E. Amblard (2021), B. Jumentier (2022), A. Pavao (2023), C. Burnard (2023)
- Recruitment Jury: LPCV (2021), Evry Assistant Prof (2021), INSERM CSS7 (2024)
Teaching
- 2017-2022: Adjunct Lecturer, Statistics and Data Science, UGA, Grenoble
- 2021-2022: Teaching omic data integration at AI4Health winter school (online)
- 2013-2014: Adjunct Lecturer, Molecular Genetics, ENS Lyon
- 2008-2012: Teaching Assistant, Genetics and Cell Biology, Univ. Paris 6
Administrative Responsibilities
- 2020-2024: MSTIC Faculty Board, Univ. Grenoble-Alpes
- 2020-2022: Quality of Life at Work Delegate, TIMC Laboratory
- Member of the redaction committee, TIMC intra-life lab journal
Mentoring
Postdoctoral Fellows
- 2021–2025: Elise Amblard, Benchmarking and multi-omic data integration
- 2021: Slim Karkar, Unsupervised deconvolution of transcriptomic data
- 2020-2021: Yasmina Kermezli, Single-cell deconvolution
Doctoral Students
- 2025 – Present: Arafate Idrissou, Dendritic cell diversity
- 2024 – Present: Juliette Louistisserand, Cancer evolution
- 2023 – Present: Hugo Barbot, Statistical deconvolution
- 2022–2025: Florence Pittion, Mediation analysis
- 2018-2021: Clémentine Decamps, Gene deregulation in cancer
Research Engineers
- 2024 – Present: Nicolas Homberg, Data challenge organisation
- 2023 – Present: Lucie Lamothe, Single-cell deconvolution and lab management
Master Students
- 2017-2022: Students in bioinformatics and biostatistics: P. Terzian, C. Decamps, A. Waguet, M. Jacobi, F. Quinquis, F. Kon-Sun-Tack, F. Pittion, A. Petrova, V. Bertrand, L. Martin-Pena
